Assistant Professor of Biochemistry
B.S. University of California San Diego
Ph.D. Stanford University
Paul Sigala's Lab Page
Paul Sigala's PubMed Literature Search
Molecular Biology Program
Biological Chemistry Program
Malaria biochemistry and cell biology, heme metabolism, organelle function and adaptation
Malaria is an ancient scourge of humanity and one of the deadliest infectious diseases worldwide. High-throughput genomics has greatly improved our knowledge of the malaria parasite, Plasmodium falciparum, but functional and mechanistic understanding of the proteins and metabolic pathways encoded by the parasite’s highly divergent genome has lagged far behind. All clinical symptoms of malaria arise during parasite infection of erythrocytes, and this developmental stage can be readily cultured in vitro to enable in-depth study of the molecular factors and cellular features that equip Plasmodium parasites to survive and proliferate within host erythrocytes.
Our research has two general goals:
- To develop and apply diverse cellular, genetic, and biochemical tools to uncover general metabolic principles and adaptations governing the unique biology of P. falciparum parasites during infection of human red blood cells.
- To apply this knowledge to develop novel strategies to target this virulent pathogen.
Our work is highly interdisciplinary and spans multiple areas of cell biology, genetics, chemical biology, protein biochemistry, and biophysics. For many proteins, we use Crispr/cas9-based genome editing to tag endogenous parasite proteins for localization and trafficking studies and for conditional regulation of protein expression in blood-stage parasites. We exploit the power of in vitro biochemistry to interrogate the functional properties of purified proteins and reconstituted biochemical pathways. As appropriate, we also carry out parallel studies in bacteria and yeast or mammalian cells to develop tools and to compare and contrast general metabolic principles in discrete prokaryotic and eukaryotic organisms.
We study the cellular mechanisms by which parasites acquire, traffic, and utilize the essential cofactor heme.
- Parasites express a complete heme biosynthesis pathway but do not require its activity during blood-stage infection, suggesting an ability to scavenge host heme. We are developing and applying genetically encoded heme biosensors and chemical probes to dissect the pathways of heme trafficking and acquisition within parasites.
- Although heme biosynthesis is not essential for parasite growth, prior results (1) suggest that chemical stimulation of porphyrin biosynthesis can be harnessed to kill parasites using light. We are developing combinatorial chemiluminescent strategies to target porphyrin synthesis for antimalarial chemotherapy.
- Plasmodium parasites require heme as a cofactor for cytochrome-dependent electron transport in the mitochondrion. We employ a battery of in-parasite and in vitro approaches to dissect and understand the maturation of the critical cytochrome c and c1 components. To clarify the broader landscape of heme utilization by parasites, we are taking cellular and biochemical approaches to test the functions of diverse non-canonical heme proteins identified within the highly divergent parasite genome.
Organelle function and adaptation
Plasmodium parasites contain a single mitochondrion and a non-photosynthetic plant-like plastid, called the apicoplast. These organelles carry out key metabolic processes but have unusual structural and functional features relative to other eukaryotic organisms. We are applying a suite of genetic, chemical, and biophysical probes to dissect and understand the functional properties and metabolic adaptations of discrete biochemical pathways within these organelles across multiple stages of sexual and asexual parasite development. Ultimately, our goals are to broaden fundamental knowledge of fascinating and divergent parasite biology and to uncover novel therapeutic opportunities.
A) Asexual parasites grow and multiply with a 48-hour life cycle within red blood cells,
where they degrade ~80% of hemoglobin and liberate free heme crystallized as hemozoin.
B) Left: Bright field image of trophozoite within host red blood cell. Right: Red fluorescence after stimulating porphyrin biosynthesis within the infected red blood cell, with autofluorescence from hemozoin crystals in the parasite digestive vacuole.
- Sigala PA, Morante K, Tsumoto K, Caaveiro JM, and Goldberg DE. “In-Cell Enzymology To Probe His–Heme Ligation in Heme Oxygenase Catalysis” Biochemistry (2016) 55:4836−4849
- Sigala P, Crowley J, Henderson J, and Goldberg D. “Deconvoluting Heme Biosynthesis to Target Blood-Stage Malaria Parasites”eLIFE (2015) 4:e09143
- Ke H*, Sigala P*, Miura K, Morrisey J, Mather M, Crowley J, Henderson J, Goldberg D, Long C, and Vaidya A. “The Heme Biosynthesis Pathway is Essential for Plasmodium falciparum Development in Mosquito Stage but not in Blood Stages” J. Biol. Chem. (2014) 289: 34827-34837
- Sigala P and Goldberg D. “The Peculiarities and Paradoxes of Plasmodium Heme Metabolism” Ann. Rev. Microbiol. (2014) 68:259-278
- Sigala P, Crowley J, Hsieh S, Henderson J, and Goldberg D. “Direct Tests of Enzymatic Heme Degradation by the Malaria Parasite Plasmodium falciparum” J. Biol. Chem. (2012) 287: 37793-37807
- Sigala P, Fafarman A, Schwans J, Fried S, Fenn T, Caaveiro JM, Pybus B, Ringe D. Petsko G, Boxer S, and Herschlag D. “Quantitative Dissection of Hydrogen Bond-Mediated Proton Transfer in the Ketosteroid Isomerase Active Site” Proc. Natl. Acad. Sci. (2013) 110:E2552-2561
- Kraut D*, Sigala P*, Fenn T, and Herschlag D. “Dissecting the Paradoxical Effects of Hydrogen Bond Mutations in the Ketosteroid Isomerase Oxyanion Hole” Proc. Natl. Acad. Sci. (2010) 107:1960-1965
- Sigala P, Tsuchida M, and Herschlag D. “Hydrogen Bond Dynamics in the Active Site of Photoactive Yellow Protein” Proc. Natl. Acad. Sci. (2009) 106:9232-9237
- Sigala P, Kraut D, Caaveiro JM, Pybus B, Ruben E, Ringe D, Petsko G, and Herschlag D. “Testing Geometrical Discrimination Within an Enzyme Active Site: Constrained Hydrogen Bonding in the Ketosteroid Isomerase Oxyanion Hole” J. Am. Chem. Soc. (2008) 130: 13696-13708